WGAViewer
[Screen shots]
[Developers]
[Publications]
[A fast run for impatient users]
[GWAS workshop booklet]
[Tool-SequenceVariantAnalyzer]
Comments and questions
Comments and questions could be directed to:
Dongliang Ge, PhD
d.ge@duke.edu
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[SequenceVariantAnalyzer(SVA)]
Introduction and Motivation
Motivation
What is WGAViewer?
Downloads
Downloading WGAViewer
Downloading example dataset
Publications
Publication
Cited by...
Installation
System requirement
Hardware
JAVA
Database connection
Installation
Memory issues
Trouble shooting
Using this software
Structure of this guide; questions to be answered
Example datasets
Data input
Batch annotation for top hits
Fast first-round annotation
Comprehensive annotation
Chromosome view
Gene view
SNP view
Finding a gene
Finding a SNP
Annotation for CNV
From chromosome to SNP: another way to look at the data
Effect of population stratification
Multiple databases
Multiple databases plotting
Searching for concurrent evidence
Supporting/QC information
Mart for IGSP Data from Association Studies (MIDAS)
Useful tools that do not require an association result set
Test for genotype-gene expression association
Annotation for a SNP
Linkage Disequilibrium test for a list of SNPs
Saving work session
Graphical user interface components
Main menu
Tool bar
Navigation bar
Status bar
Tabbed panels
Configurations
Checking WGAViewer updates
Online databases version control
Frequently asked questions
FAQ
Contact
Comments & questions
Version history
Version history
Acknowledgement
Credits, sources of supports
References
References
Citing WGAViewer
How to cite
License and Copyright
License and Copyright
Documentation
WGAViewer documentation (zipped PDF)
Contact
| ©2011
Dongliang Ge, PhD