WGAViewer

Downloading example dataset

Important note: the downloaded dataset can only be loaded by WGAViewer version 1.25U or later.

[1] GWAS example dataset (Illumina HumanHap 550)

>> Click here to download example dataset (ZIP file, size=30 Mb)

The GWAS results included in this example dataset were fully described in this paper:

Fellay, J., K.V. Shianna, D. Ge, S. Colombo, B. Ledergerber, M. Weale, K. Zhang, C. Gumbs, A. Castagna, A. Cossarizza, A. Cozzi-Lepri, A. De Luca, P. Easterbrook, P. Francioli, S. Mallal, J. Martinez-Picado, J.M. Miro, N. Obel, J.P. Smith, J. Wyniger, P. Descombes, S.E. Antonarakis, N.L. Letvin, A.J. McMichael, B.F. Haynes, A. Telenti, and D.B. Goldstein. A whole-genome association study of major determinants for host control of HIV-1. Science 2007 Aug; 317: 944-947.

Here is the instruction on how to load the dataset.

[2] CNV (copy number variation) annotation example dataset

>> Click here to download example dataset (ZIP file, size=290 Kb)

The CNV results included in this example dataset were described in this paper:

Need AC, Ge D, Weale ME, Maia J, Feng S, Heinzen EL, Shianna KV, Yoon W, Kasperavičiūtė D, Gennarelli M, Strittmatter WJ, Bonvicini C, Rossi G, Jayathilake K, Cola PA, McEvoy JP, Keefe RSE, Fisher EMC, St. Jean PL, Giegling I, Hartmann AM, Möller H, Ruppert A, Fraser G, Crombie C, Middleton LT, St. Clair D, Roses AD, Muglia P, Francks C, Rujescu D, Meltzer HY, Goldstein DB. A Genome-Wide Investigation of SNPs and CNVs in Schizophrenia. PLoS Genet 2009 Feb; 5 (2) : e1000373. doi:10.1371/journal.pgen.1000373

 

Important note: The CNV dataset and analysis described in the above paper has involved a complex series of quality control, annotation, and analysis procedures. The example dataset downloaded here is ONLY for the demonstration of CNV annotation function of the WGAViewer program.

Here is the instruction on how to load and annotate the CNV dataset.