Useful tools that do not require an association result set
In addition to the support and annotation for WGA result sets, WGAViewer also offers several classes of annotation tools that do not require such data sets. These include:
Tests for association of SNP with gene expression
Linkage Disequilibrium test for a list of SNPs
Structure of this guide; questions to be answered Example datasets Data input Batch annotation for top hits 
Fast first-round annotation Comprehensive annotation
Chromosome view Gene view SNP view Finding a gene Finding a SNP Annotation for CNV From chromosome to SNP: another way to look at the data Effect of population stratification Multiple databases Multiple databases plotting Searching for concurrent evidence Supporting/QC information Mart for IGSP Data from Association Studies (MIDAS) Useful tools that do not require an association result set Test for genotype-gene expression association Annotation for a SNP Linkage Disequilibrium test for a list of SNPs Saving work session Graphical user interface components Main menu Tool bar Navigation bar Status bar Tabbed panels Configurations Checking WGAViewer updates Online databases version control
Publication